The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice

Byoung Moo Lee; Young Jin Park; Dong Suk Park; Hee Wan Kang; Jeong Gu Kim; Eun Sung Song; In Cheol Park; Ung Han Yoon; Jang Ho Hahn; Bon Sung Koo; Gil Bok Lee; Hyungtae Kim; Hyun Seok Park; Kyong Oh Yoon; Jeong Hyun Kim; Chol Hee Jung; Nea Hyung Koh; Jeong Sun Seo; Seung Joo Go

doi:10.1093/nar/gki206

The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice

Byoung Moo Lee, Young Jin Park, Dong Suk Park, Hee Wan Kang, Jeong Gu Kim, Eun Sung Song, In Cheol Park, Ung Han Yoon, Jang Ho Hahn, Bon Sung Koo, Gil Bok Lee, Hyungtae Kim, Hyun Seok Park, Kyong Oh Yoon, Jeong Hyun Kim, Chol Hee Jung, Nea Hyung Koh, Jeong Sun Seo, Seung Joo Go

Department of Computer Science & Engineering

Research output: Contribution to journal › Article › peer-review

359 Scopus citations

Abstract

The nucleotide sequence was determined for the genome of Xanthomonas oryzae pathovar oryzae (Xoo) KACC10331, a bacterium that causes bacterial blight in rice (Oryza sativa L.). The genome is comprised of a single, 4 941 439 bp, circular chromosome that is G + C rich (63.7%). The genome includes 4637 open reading frames (ORFs) of which 3340 (72.0%) could be assigned putative function. Orthologs for 80% of the predicted Xoo genes were found in the previously reported X.axonopodis pv. citri (Xac) and X.campestris pv. campestris (Xcc) genomes, but 245 genes apparently specific to Xoo were identified. Xoo genes likely to be associated with pathogenesis include eight with similarity to Xanthomonas avirulence (avr) genes, a set of hypersensitive reaction and pathogenicity (hrp) genes, genes for exopolysaccharide production, and genes encoding extracellular plant cell wall-degrading enzymes. The presence of these genes provides insights into the interactions of this pathogen with its gramineous host.

Original language	English
Pages (from-to)	577-586
Number of pages	10
Journal	Nucleic Acids Research
Volume	33
Issue number	2
DOIs	https://doi.org/10.1093/nar/gki206
State	Published - 2005

Bibliographical note

Funding Information:
We thank Dr S. H. Choi for kindly providing the strain of Xoo, and Prof. J. E. Leach at Colorado State University and Prof. S. W. Hutcheson at University of Maryland for stimulating discussions and proofreading of the manuscript. Project funding was from the BioGreen21 Foundation under Rural Development Administration, Korea. Funding to pay the Open Access publication charges for this article was provided by National Institute of Agricultural Biotechnology.

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Lee, B. M., Park, Y. J., Park, D. S., Kang, H. W., Kim, J. G., Song, E. S., Park, I. C., Yoon, U. H., Hahn, J. H., Koo, B. S., Lee, G. B., Kim, H., Park, H. S., Yoon, K. O., Kim, J. H., Jung, C. H., Koh, N. H., Seo, J. S., & Go, S. J. (2005). The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice. Nucleic Acids Research, 33(2), 577-586. https://doi.org/10.1093/nar/gki206

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title = "The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice",

abstract = "The nucleotide sequence was determined for the genome of Xanthomonas oryzae pathovar oryzae (Xoo) KACC10331, a bacterium that causes bacterial blight in rice (Oryza sativa L.). The genome is comprised of a single, 4 941 439 bp, circular chromosome that is G + C rich (63.7%). The genome includes 4637 open reading frames (ORFs) of which 3340 (72.0%) could be assigned putative function. Orthologs for 80% of the predicted Xoo genes were found in the previously reported X.axonopodis pv. citri (Xac) and X.campestris pv. campestris (Xcc) genomes, but 245 genes apparently specific to Xoo were identified. Xoo genes likely to be associated with pathogenesis include eight with similarity to Xanthomonas avirulence (avr) genes, a set of hypersensitive reaction and pathogenicity (hrp) genes, genes for exopolysaccharide production, and genes encoding extracellular plant cell wall-degrading enzymes. The presence of these genes provides insights into the interactions of this pathogen with its gramineous host.",

author = "Lee, {Byoung Moo} and Park, {Young Jin} and Park, {Dong Suk} and Kang, {Hee Wan} and Kim, {Jeong Gu} and Song, {Eun Sung} and Park, {In Cheol} and Yoon, {Ung Han} and Hahn, {Jang Ho} and Koo, {Bon Sung} and Lee, {Gil Bok} and Hyungtae Kim and Park, {Hyun Seok} and Yoon, {Kyong Oh} and Kim, {Jeong Hyun} and Jung, {Chol Hee} and Koh, {Nea Hyung} and Seo, {Jeong Sun} and Go, {Seung Joo}",

note = "Funding Information: We thank Dr S. H. Choi for kindly providing the strain of Xoo, and Prof. J. E. Leach at Colorado State University and Prof. S. W. Hutcheson at University of Maryland for stimulating discussions and proofreading of the manuscript. Project funding was from the BioGreen21 Foundation under Rural Development Administration, Korea. Funding to pay the Open Access publication charges for this article was provided by National Institute of Agricultural Biotechnology.",

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doi = "10.1093/nar/gki206",

language = "English",

volume = "33",

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Lee, BM, Park, YJ, Park, DS, Kang, HW, Kim, JG, Song, ES, Park, IC, Yoon, UH, Hahn, JH, Koo, BS, Lee, GB, Kim, H, Park, HS, Yoon, KO, Kim, JH, Jung, CH, Koh, NH, Seo, JS & Go, SJ 2005, 'The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice', Nucleic Acids Research, vol. 33, no. 2, pp. 577-586. https://doi.org/10.1093/nar/gki206

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AU - Kim, Jeong Gu

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AU - Yoon, Ung Han

AU - Hahn, Jang Ho

AU - Koo, Bon Sung

AU - Lee, Gil Bok

AU - Kim, Hyungtae

AU - Park, Hyun Seok

AU - Yoon, Kyong Oh

AU - Kim, Jeong Hyun

AU - Jung, Chol Hee

AU - Koh, Nea Hyung

AU - Seo, Jeong Sun

AU - Go, Seung Joo

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The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice

Abstract

Bibliographical note

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