The complete mitochondrial genome of the red-banded lobster Metanephrops thomsoni (Crustacea, Astacidea, Nephropidae): A novel gene order

Dong Ha Ahn; Gi Sik Min; Joong Ki Park; Sanghee Kim

doi:10.3109/19401736.2015.1043536

The complete mitochondrial genome of the red-banded lobster Metanephrops thomsoni (Crustacea, Astacidea, Nephropidae): A novel gene order

Dong Ha Ahn, Gi Sik Min, Joong Ki Park, Sanghee Kim

EcoScience

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

Abstract

The complete mitochondrial genome (mitogenome) of the red-banded lobster, Metanephrops thomsoni (Decapoda, Astacidea, Nephropidae), is 19,835 bp in length and contains 13 proteincoding genes (PCGs), 2 ribosomal RNAs, 24 transfer RNAs (including additional copies of trnW and trnL1), and 2 control regions (CR). The mitogenome of M. thomsoni has 10 long intergenic sequences (71-237 bp) with a high AT content (70.0%). The two CRs show 59.6% similarity and have an identical sequence region with a length of 295 bp. The mitogenome of M. thomsoni shows a novel gene arrangement compared with the pancrustacean ground pattern and is identical to that of M. sibogae, except for the two additional tRNAs (trnW and trnL1). Phylogenetic tree from maximum likelihood analysis using the concatenated sequences of 13 PCGs depicted M. thomsoni as one of the members of the superfamily Nephropoidea within Astacidea.

Original language	English
Pages (from-to)	2663-2664
Number of pages	2
Journal	Mitochondrial DNA
Volume	27
Issue number	4
DOIs	https://doi.org/10.3109/19401736.2015.1043536
State	Published - 10 Aug 2016

Bibliographical note

Funding Information:
The authors report no conflicts of interest. The authors alone are responsible for the content and writing of the paper. This work was supported by the Basic Research Program of the Korea Polar Research Institute(KOPRI) (PE15020) for S. Kim, and the program on Management of Marine Organisms causing Ecological Disturbance and Harmful Effects, funded by KIMST/MOF for G.-S. Min.

Publisher Copyright:
© 2015 Taylor & Francis.

Keywords

Astacidea
Metanephrops thomsoni
Mitogenome
Nephropidae
Red-banded lobster
Two control regions

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10.3109/19401736.2015.1043536

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title = "The complete mitochondrial genome of the red-banded lobster Metanephrops thomsoni (Crustacea, Astacidea, Nephropidae): A novel gene order",

abstract = "The complete mitochondrial genome (mitogenome) of the red-banded lobster, Metanephrops thomsoni (Decapoda, Astacidea, Nephropidae), is 19,835 bp in length and contains 13 proteincoding genes (PCGs), 2 ribosomal RNAs, 24 transfer RNAs (including additional copies of trnW and trnL1), and 2 control regions (CR). The mitogenome of M. thomsoni has 10 long intergenic sequences (71-237 bp) with a high AT content (70.0%). The two CRs show 59.6% similarity and have an identical sequence region with a length of 295 bp. The mitogenome of M. thomsoni shows a novel gene arrangement compared with the pancrustacean ground pattern and is identical to that of M. sibogae, except for the two additional tRNAs (trnW and trnL1). Phylogenetic tree from maximum likelihood analysis using the concatenated sequences of 13 PCGs depicted M. thomsoni as one of the members of the superfamily Nephropoidea within Astacidea.",

keywords = "Astacidea, Metanephrops thomsoni, Mitogenome, Nephropidae, Red-banded lobster, Two control regions",

author = "Ahn, {Dong Ha} and Min, {Gi Sik} and Park, {Joong Ki} and Sanghee Kim",

note = "Funding Information: The authors report no conflicts of interest. The authors alone are responsible for the content and writing of the paper. This work was supported by the Basic Research Program of the Korea Polar Research Institute(KOPRI) (PE15020) for S. Kim, and the program on Management of Marine Organisms causing Ecological Disturbance and Harmful Effects, funded by KIMST/MOF for G.-S. Min. Publisher Copyright: {\textcopyright} 2015 Taylor & Francis.",

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doi = "10.3109/19401736.2015.1043536",

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AU - Ahn, Dong Ha

AU - Min, Gi Sik

AU - Park, Joong Ki

AU - Kim, Sanghee

N1 - Funding Information: The authors report no conflicts of interest. The authors alone are responsible for the content and writing of the paper. This work was supported by the Basic Research Program of the Korea Polar Research Institute(KOPRI) (PE15020) for S. Kim, and the program on Management of Marine Organisms causing Ecological Disturbance and Harmful Effects, funded by KIMST/MOF for G.-S. Min. Publisher Copyright: © 2015 Taylor & Francis.

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N2 - The complete mitochondrial genome (mitogenome) of the red-banded lobster, Metanephrops thomsoni (Decapoda, Astacidea, Nephropidae), is 19,835 bp in length and contains 13 proteincoding genes (PCGs), 2 ribosomal RNAs, 24 transfer RNAs (including additional copies of trnW and trnL1), and 2 control regions (CR). The mitogenome of M. thomsoni has 10 long intergenic sequences (71-237 bp) with a high AT content (70.0%). The two CRs show 59.6% similarity and have an identical sequence region with a length of 295 bp. The mitogenome of M. thomsoni shows a novel gene arrangement compared with the pancrustacean ground pattern and is identical to that of M. sibogae, except for the two additional tRNAs (trnW and trnL1). Phylogenetic tree from maximum likelihood analysis using the concatenated sequences of 13 PCGs depicted M. thomsoni as one of the members of the superfamily Nephropoidea within Astacidea.

AB - The complete mitochondrial genome (mitogenome) of the red-banded lobster, Metanephrops thomsoni (Decapoda, Astacidea, Nephropidae), is 19,835 bp in length and contains 13 proteincoding genes (PCGs), 2 ribosomal RNAs, 24 transfer RNAs (including additional copies of trnW and trnL1), and 2 control regions (CR). The mitogenome of M. thomsoni has 10 long intergenic sequences (71-237 bp) with a high AT content (70.0%). The two CRs show 59.6% similarity and have an identical sequence region with a length of 295 bp. The mitogenome of M. thomsoni shows a novel gene arrangement compared with the pancrustacean ground pattern and is identical to that of M. sibogae, except for the two additional tRNAs (trnW and trnL1). Phylogenetic tree from maximum likelihood analysis using the concatenated sequences of 13 PCGs depicted M. thomsoni as one of the members of the superfamily Nephropoidea within Astacidea.

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The complete mitochondrial genome of the red-banded lobster Metanephrops thomsoni (Crustacea, Astacidea, Nephropidae): A novel gene order

Abstract

Bibliographical note

Keywords

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