TY - JOUR
T1 - Predictive capacity of a non-radioisotopic local lymph node assay using flow cytometry, LLNA
T2 - BrdU-FCM: Comparison of a cutoff approach and inferential statistics
AU - Kim, Da Eun
AU - Yang, Hyeri
AU - Jang, Won Hee
AU - Jung, Kyoung Mi
AU - Park, Miyoung
AU - Choi, Jin Kyu
AU - Jung, Mi Sook
AU - Jeon, Eun Young
AU - Heo, Yong
AU - Yeo, Kyung Wook
AU - Jo, Ji Hoon
AU - Park, Jung Eun
AU - Sohn, Soo Jung
AU - Kim, Tae Sung
AU - Ahn, Il Young
AU - Jeong, Tae Cheon
AU - Lim, Kyung Min
AU - Bae, Seung Jin
N1 - Funding Information:
This research was supported by a grant ( 13172MFDS987 ) from the Ministry of Food and Drug Safety of Korea.
Publisher Copyright:
© 2015 Elsevier Inc.
PY - 2016/3/1
Y1 - 2016/3/1
N2 - In order for a novel test method to be applied for regulatory purposes, its reliability and relevance, i.e., reproducibility and predictive capacity, must be demonstrated. Here, we examine the predictive capacity of a novel non-radioisotopic local lymph node assay, LLNA:BrdU-FCM (5-bromo-2'-deoxyuridine-flow cytometry), with a cutoff approach and inferential statistics as a prediction model. 22 reference substances in OECD TG429 were tested with a concurrent positive control, hexylcinnamaldehyde 25%(PC), and the stimulation index (SI) representing the fold increase in lymph node cells over the vehicle control was obtained. The optimal cutoff SI (2.7 ≤ cutoff < 3.5), with respect to predictive capacity, was obtained by a receiver operating characteristic curve, which produced 90.9% accuracy for the 22 substances. To address the inter-test variability in responsiveness, SI values standardized with PC were employed to obtain the optimal percentage cutoff (42.6 ≤ cutoff < 57.3% of PC), which produced 86.4% accuracy. A test substance may be diagnosed as a sensitizer if a statistically significant increase in SI is elicited. The parametric one-sided t-test and non-parametric Wilcoxon rank-sum test produced 77.3% accuracy. Similarly, a test substance could be defined as a sensitizer if the SI means of the vehicle control, and of the low, middle, and high concentrations were statistically significantly different, which was tested using ANOVA or Kruskal-Wallis, with post hoc analysis, Dunnett, or DSCF (Dwass-Steel-Critchlow-Fligner), respectively, depending on the equal variance test, producing 81.8% accuracy. The absolute SI-based cutoff approach produced the best predictive capacity, however the discordant decisions between prediction models need to be examined further.
AB - In order for a novel test method to be applied for regulatory purposes, its reliability and relevance, i.e., reproducibility and predictive capacity, must be demonstrated. Here, we examine the predictive capacity of a novel non-radioisotopic local lymph node assay, LLNA:BrdU-FCM (5-bromo-2'-deoxyuridine-flow cytometry), with a cutoff approach and inferential statistics as a prediction model. 22 reference substances in OECD TG429 were tested with a concurrent positive control, hexylcinnamaldehyde 25%(PC), and the stimulation index (SI) representing the fold increase in lymph node cells over the vehicle control was obtained. The optimal cutoff SI (2.7 ≤ cutoff < 3.5), with respect to predictive capacity, was obtained by a receiver operating characteristic curve, which produced 90.9% accuracy for the 22 substances. To address the inter-test variability in responsiveness, SI values standardized with PC were employed to obtain the optimal percentage cutoff (42.6 ≤ cutoff < 57.3% of PC), which produced 86.4% accuracy. A test substance may be diagnosed as a sensitizer if a statistically significant increase in SI is elicited. The parametric one-sided t-test and non-parametric Wilcoxon rank-sum test produced 77.3% accuracy. Similarly, a test substance could be defined as a sensitizer if the SI means of the vehicle control, and of the low, middle, and high concentrations were statistically significantly different, which was tested using ANOVA or Kruskal-Wallis, with post hoc analysis, Dunnett, or DSCF (Dwass-Steel-Critchlow-Fligner), respectively, depending on the equal variance test, producing 81.8% accuracy. The absolute SI-based cutoff approach produced the best predictive capacity, however the discordant decisions between prediction models need to be examined further.
KW - Descriptive and inferential statistics
KW - LLNA:BrdU-FCM
KW - Local lymph node assay
KW - Prediction model
KW - Predictive capacity
KW - Skin sensitization
UR - http://www.scopus.com/inward/record.url?scp=84949780953&partnerID=8YFLogxK
U2 - 10.1016/j.vascn.2015.12.001
DO - 10.1016/j.vascn.2015.12.001
M3 - Article
C2 - 26654807
AN - SCOPUS:84949780953
SN - 1056-8719
VL - 78
SP - 76
EP - 84
JO - Journal of Pharmacological and Toxicological Methods
JF - Journal of Pharmacological and Toxicological Methods
ER -