Increase of organic solvent tolerance of Escherichia coli by the deletion of two regulator genes, fadR and marR

Hye Yun Oh, Jae Ok Lee, Ok Bin Kim

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42 Scopus citations


The improvement of bacterial tolerance to organic solvents is a main prerequisite for the microbial production of biofuels which are toxic to cells. For targeted genetic engineering of Escherichia coli to increase organic solvent tolerances (OSTs), we selected and investigated a total of 12 genes that participate in relevant mechanisms to tolerance. In a spot assay of 12 knockout mutants with n-hexane and cyclohexane, the genes fadR and marR were finally selected as the two key genes for engineering. Fatty acid degradation regulon (FadR) regulates the biosynthesis and degradation of fatty acids coordinately, and the multiple antibiotic resistance repressor (MarR) is the repressor of the global regulator MarA for multidrug resistance. In the competitive growth assay, the ΔmarR mutant became dominant when the pooled culture of 11 knockout mutants was cultivated successively in the presence of organic solvent. The increased OSTs in the ΔmarR and ΔfadR mutants were confirmed by a growth experiment and a viability test. The even more highly enhanced OSTs in the ΔfadR ΔmarR double mutant were shown compared with the two single mutants. Cellular fatty acid analysis showed that the high ratio of saturated fatty acids to unsaturated fatty acids plays a crucial role in OSTs. Furthermore, the intracellular accumulation of OST strains was significantly decreased compared with the wild-type strain.

Original languageEnglish
Pages (from-to)1619-1627
Number of pages9
JournalApplied Microbiology and Biotechnology
Issue number6
StatePublished - Dec 2012

Bibliographical note

Funding Information:
Acknowledgments This work was supported by the Advanced Biomass R&D Center (ABC) of the Global Frontier Project funded by the Ministry of Education, Science and Technology (ABC-2011-0028386). We are grateful to Prof. G. Unden (Univ. Mainz) for supplying plasmids/ phage and to Prof. K.S. Cho (Ewha Univ.) for providing the use of GC.


  • Biofuel
  • MDR
  • Organic solvent tolerances
  • Saturated fatty acid
  • fadR
  • marR


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