Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29T isolated from salt-fermented food

In Tae Cha; Mi Hwa Lee; Byung Yong Kim; Yong Joon Cho; Dae Won Kim; Kyung June Yim; Hye Seon Song; Myung Ji Seo; Jin Kyu Rhee; Jong Soon Choi; Hak Jong Choi; Changmann Yoon; Seong Woon Roh; Young Do Nam

doi:10.1186/s40793-015-0047-4

Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29^T isolated from salt-fermented food

In Tae Cha, Mi Hwa Lee, Byung Yong Kim, Yong Joon Cho, Dae Won Kim, Kyung June Yim, Hye Seon Song, Myung Ji Seo, Jin Kyu Rhee, Jong Soon Choi, Hak Jong Choi, Changmann Yoon, Seong Woon Roh, Young Do Nam

Food Science and Biotechnology

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29^T is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10%–30% (w/v) NaCl. We present the annotated H. jeotgali A29^T genome sequence along with a summary of its features. The 4,131,621 bp genome with a GC content of 64.9% comprises 4,215 protein-coding genes and 127 RNA genes. The sequence can provide useful information on genetic mechanisms that enable haloarchaea to endure a hypersaline environment.

Original language	English
Article number	49
Journal	Standards in Genomic Sciences
Volume	10
Issue number	AUGUST2015
DOIs	https://doi.org/10.1186/s40793-015-0047-4
State	Published - 1 Aug 2015

Keywords

Genome sequence
Haloarchaeon
Haloterrigena jeotgali
Jeotgal
Salt-fermented food

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10.1186/s40793-015-0047-4

Cite this

Cha, I. T., Lee, M. H., Kim, B. Y., Cho, Y. J., Kim, D. W., Yim, K. J., Song, H. S., Seo, M. J., Rhee, J. K., Choi, J. S., Choi, H. J., Yoon, C., Roh, S. W., & Nam, Y. D. (2015). Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29^T isolated from salt-fermented food. Standards in Genomic Sciences, 10(AUGUST2015), Article 49. https://doi.org/10.1186/s40793-015-0047-4

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title = "Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29T isolated from salt-fermented food",

abstract = "Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29T is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10%–30% (w/v) NaCl. We present the annotated H. jeotgali A29T genome sequence along with a summary of its features. The 4,131,621 bp genome with a GC content of 64.9% comprises 4,215 protein-coding genes and 127 RNA genes. The sequence can provide useful information on genetic mechanisms that enable haloarchaea to endure a hypersaline environment.",

keywords = "Genome sequence, Haloarchaeon, Haloterrigena jeotgali, Jeotgal, Salt-fermented food",

author = "Cha, {In Tae} and Lee, {Mi Hwa} and Kim, {Byung Yong} and Cho, {Yong Joon} and Kim, {Dae Won} and Yim, {Kyung June} and Song, {Hye Seon} and Seo, {Myung Ji} and Rhee, {Jin Kyu} and Choi, {Jong Soon} and Choi, {Hak Jong} and Changmann Yoon and Roh, {Seong Woon} and Nam, {Young Do}",

note = "Funding Information: This research was supported by Basic Science Research Program through the National Research Foundation of Korea funded by the Ministry of Science, ICT & Future Planning (2012R1A1A2040922 and 2014R1A1A1002980) and a Korea Basic Science Institute NAP grant (T34780). Publisher Copyright: {\textcopyright} 2015 Cha et al.",

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AU - Cha, In Tae

AU - Lee, Mi Hwa

AU - Kim, Byung Yong

AU - Cho, Yong Joon

AU - Kim, Dae Won

AU - Yim, Kyung June

AU - Song, Hye Seon

AU - Seo, Myung Ji

AU - Rhee, Jin Kyu

AU - Choi, Jong Soon

AU - Choi, Hak Jong

AU - Yoon, Changmann

AU - Roh, Seong Woon

AU - Nam, Young Do

N1 - Funding Information: This research was supported by Basic Science Research Program through the National Research Foundation of Korea funded by the Ministry of Science, ICT & Future Planning (2012R1A1A2040922 and 2014R1A1A1002980) and a Korea Basic Science Institute NAP grant (T34780). Publisher Copyright: © 2015 Cha et al.

PY - 2015/8/1

Y1 - 2015/8/1

N2 - Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29T is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10%–30% (w/v) NaCl. We present the annotated H. jeotgali A29T genome sequence along with a summary of its features. The 4,131,621 bp genome with a GC content of 64.9% comprises 4,215 protein-coding genes and 127 RNA genes. The sequence can provide useful information on genetic mechanisms that enable haloarchaea to endure a hypersaline environment.

AB - Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29T is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10%–30% (w/v) NaCl. We present the annotated H. jeotgali A29T genome sequence along with a summary of its features. The 4,131,621 bp genome with a GC content of 64.9% comprises 4,215 protein-coding genes and 127 RNA genes. The sequence can provide useful information on genetic mechanisms that enable haloarchaea to endure a hypersaline environment.

KW - Genome sequence

KW - Haloarchaeon

KW - Haloterrigena jeotgali

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