Fine-tuning of gene expression dynamics by the Set2-Rpd3S pathway

Bo Bae Lee, Ji Hyun Kim, Tae Soo Kim

Research output: Contribution to journalArticlepeer-review

5 Scopus citations


RNA polymerase II-interacting the Set2 methyltransferase co-transcriptionally methylates histone H3 at lysine 36 within the body of genes. This modification facilitates histone deacetylation by Rpd3S HDAC in 3' transcribed regions to suppress cryptic initiation and slow elongation. Although this pathway is important for global deacetylation, no strong effects have been seen on genome-wide transcription under optimized laboratory conditions. In contrast, this pathway slows the kinetics of mRNA induction when target genes are induced upon environmental changes. Interestingly, a majority of Set2-repressed genes are overlapped by a lncRNA transcription that targets H3K36 methylation and deacetylation by Rpd3S HDAC to mRNA promoters. Furthermore, this pathway delays the induction of many cryptic transcripts upon environmental changes. Therefore, the Set2-Rpd3S HDAC pathway functions to fine-tune expression dynamics of mRNAs and ncRNAs.

Original languageEnglish
Pages (from-to)162-163
Number of pages2
JournalBMB Reports
Issue number4
StatePublished - 2017

Bibliographical note

Funding Information:
This work was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIP) (No. 2012R1A5A1048236).

Publisher Copyright:
© 2017 by the The Korean Society for Biochemistry and Molecular Biology.


  • Gene expression dynamics
  • H3K36 methylation
  • Histone deacetylation
  • Rpd3S HDAC
  • Set2


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