Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43T isolated from fermented seafood

Hae Won Lee; Dae Won Kim; Mi Hwa Lee; Byung Yong Kim; Yong Joon Cho; Kyung June Yim; Hye Seon Song; Jin Kyu Rhee; Myung Ji Seo; Hak Jong Choi; Jong Soon Choi; Dong Gi Lee; Changmann Yoon; Young Do Nam; Seong Woon Roh

doi:10.1186/s40793-015-0051-8

Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43^T isolated from fermented seafood

Hae Won Lee, Dae Won Kim, Mi Hwa Lee, Byung Yong Kim, Yong Joon Cho, Kyung June Yim, Hye Seon Song, Jin Kyu Rhee, Myung Ji Seo, Hak Jong Choi, Jong Soon Choi, Dong Gi Lee, Changmann Yoon, Young Do Nam, Seong Woon Roh

Department of Food Science & Biotechnology

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

An extremely halophilic archaeon, Haladaptatus cibarius D43^T, was isolated from traditional Korean salt-rich fermented seafood. Strain D43^T shows the highest 16S rRNA gene sequence similarity (98.7%) with Haladaptatus litoreus RO1-28^T, is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43^T. The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G + C content of 57.76%.

Original language	English
Article number	53
Journal	Standards in Genomic Sciences
Volume	10
Issue number	AUGUST2015
DOIs	https://doi.org/10.1186/s40793-015-0051-8
State	Published - 1 Aug 2015

Bibliographical note

Publisher Copyright:
© 2015 Lee et al.

Keywords

Extremely halophilic archaea
Genome sequence
Glycine betaine
Haladaptatus cibarius
Salt-fermented seafood
Trehalose

Access to Document

10.1186/s40793-015-0051-8

Cite this

Lee, H. W., Kim, D. W., Lee, M. H., Kim, B. Y., Cho, Y. J., Yim, K. J., Song, H. S., Rhee, J. K., Seo, M. J., Choi, H. J., Choi, J. S., Lee, D. G., Yoon, C., Nam, Y. D., & Roh, S. W. (2015). Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43^T isolated from fermented seafood. Standards in Genomic Sciences, 10(AUGUST2015), Article 53. https://doi.org/10.1186/s40793-015-0051-8

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title = "Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43T isolated from fermented seafood",

abstract = "An extremely halophilic archaeon, Haladaptatus cibarius D43T, was isolated from traditional Korean salt-rich fermented seafood. Strain D43T shows the highest 16S rRNA gene sequence similarity (98.7%) with Haladaptatus litoreus RO1-28T, is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43T. The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G + C content of 57.76%.",

keywords = "Extremely halophilic archaea, Genome sequence, Glycine betaine, Haladaptatus cibarius, Salt-fermented seafood, Trehalose",

author = "Lee, {Hae Won} and Kim, {Dae Won} and Lee, {Mi Hwa} and Kim, {Byung Yong} and Cho, {Yong Joon} and Yim, {Kyung June} and Song, {Hye Seon} and Rhee, {Jin Kyu} and Seo, {Myung Ji} and Choi, {Hak Jong} and Choi, {Jong Soon} and Lee, {Dong Gi} and Changmann Yoon and Nam, {Young Do} and Roh, {Seong Woon}",

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year = "2015",

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day = "1",

doi = "10.1186/s40793-015-0051-8",

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Lee, HW, Kim, DW, Lee, MH, Kim, BY, Cho, YJ, Yim, KJ, Song, HS, Rhee, JK, Seo, MJ, Choi, HJ, Choi, JS, Lee, DG, Yoon, C, Nam, YD & Roh, SW 2015, 'Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43^T isolated from fermented seafood', Standards in Genomic Sciences, vol. 10, no. AUGUST2015, 53. https://doi.org/10.1186/s40793-015-0051-8

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AU - Lee, Hae Won

AU - Kim, Dae Won

AU - Lee, Mi Hwa

AU - Kim, Byung Yong

AU - Cho, Yong Joon

AU - Yim, Kyung June

AU - Song, Hye Seon

AU - Rhee, Jin Kyu

AU - Seo, Myung Ji

AU - Choi, Hak Jong

AU - Choi, Jong Soon

AU - Lee, Dong Gi

AU - Yoon, Changmann

AU - Nam, Young Do

AU - Roh, Seong Woon

PY - 2015/8/1

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AB - An extremely halophilic archaeon, Haladaptatus cibarius D43T, was isolated from traditional Korean salt-rich fermented seafood. Strain D43T shows the highest 16S rRNA gene sequence similarity (98.7%) with Haladaptatus litoreus RO1-28T, is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43T. The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G + C content of 57.76%.

KW - Extremely halophilic archaea

KW - Genome sequence

KW - Glycine betaine

KW - Haladaptatus cibarius

KW - Salt-fermented seafood

KW - Trehalose

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