Abstract
In this paper, we analyzed the complete mitochondrial genome sequence of Ocypode stimpsoni. Whole-genome sequencing was performed using the MGISEQ-2000 platform. The length of the complete mitochondrial genome was 15,557 bp, and data were submitted to NCBI (MN917464). The genome consisted of 67.8% A + T bias, it included 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, and a putative control region. The phylogenetic tree was constructed based on sequences of 13 PCGs identified by the maximum likelihood (ML) method. Collectively, the results support the original taxonomy assigned, O. stimpsoni belongs to Ocypodidae, Ocypodoidea. In addition, species in Ocypodoidea and Grapsoidea have a reciprocal paraphyly relationship, as demonstrated in previous studies.
| Original language | English |
|---|---|
| Pages (from-to) | 1699-1700 |
| Number of pages | 2 |
| Journal | Mitochondrial DNA Part B: Resources |
| Volume | 5 |
| Issue number | 2 |
| DOIs | |
| State | Published - 2 Apr 2020 |
Bibliographical note
Funding Information:Brachyura ; Ocypode stimpsoni ; mitochondrial genome ; phylogenetic analysis Ministry of Oceans and Fisheries, Korea 20190518 This research was a part of the project titled ‘Improvement of management strategies on marine disturbing and harmful organisms funded by the Ministry of Oceans and Fisheries, Korea’ [No. 20190518].
Publisher Copyright:
© 2020, © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
Keywords
- Brachyura
- Ocypode stimpsoni
- mitochondrial genome
- phylogenetic analysis