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Complete genome sequence of Vibrio parahaemolyticus FORC_023 isolated from raw fish storage water

  • Han Young Chung
  • , Eun Jung Na
  • , Kyu Ho Lee
  • , Sangryeol Ryu
  • , Hyunjin Yoon
  • , Ju Hoon Lee
  • , Hyeun Bum Kim
  • , Heebal Kim
  • , Sang Ho Choi
  • , Bong Soo Kim

Research output: Contribution to journalArticlepeer-review

5 Scopus citations

Abstract

Vibrio parahaemolyticusis a Gram-negative halophilic bacterium that causes food-borne gastroenteritis in humans who consumeV. parahaemolyticus-contaminated seafood.The FORC_023 strain was isolated from raw fish storage water, containing live fish at a sashimi restaurant. Here, we aimed to sequence and characterize the genome of the FORC_023 strain. The genome of the FORC_023 strain showed two circular chromosomes, which contained 4227 open reading frames (ORFs), 131 tRNA genes and 37 rRNA genes. Although the genome of FORC_023 did not include major virulence genes, such as genes encoding thermostable direct hemolysin (TDH) and TDH-related hemolysin (TRH), it contained genes encoding other hemolysins, secretion systems, iron uptake-related proteins and severalV. parahaemolyticusislands. The highest average nucleotide identity value was obtained between the FORC_023 strain and UCM-V493 (CP007004-6). Comparative genomic analysis of FORC_023 with UCM-V493 revealed that FORC_023 carried an additional genomic region encoding virulence factors, such as repeats-in-toxin and type II secretion factors. Furthermore,in vitrocytotoxicity testing showed that FORC_023 exhibited a high level of cytotoxicity toward INT-407 human epithelial cells. These results suggested that the FORC_023 strain may be a food-borne pathogen.

Original languageEnglish
Pages (from-to)ftw032
JournalPathogens and disease
Volume74
Issue number4
DOIs
StatePublished - 1 Jun 2016

Bibliographical note

Publisher Copyright:
© FEMS 2016. All rights reserved. For permissions, please e-mail: [email protected].

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Keywords

  • comparative analysis
  • food-borne pathogen
  • V. parahaemolyticus island
  • Vibrio parahaemolyticus; genome sequence
  • virulence factor

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