Complete genome sequence of Vibrio parahaemolyticus FORC_023 isolated from raw fish storage water

Han Young Chung, Eun Jung Na, Kyu Ho Lee, Sangryeol Ryu, Hyunjin Yoon, Ju Hoon Lee, Hyeun Bum Kim, Heebal Kim, Sang Ho Choi, Bong Soo Kim

Research output: Contribution to journalArticlepeer-review

5 Scopus citations

Abstract

Vibrio parahaemolyticusis a Gram-negative halophilic bacterium that causes food-borne gastroenteritis in humans who consumeV. parahaemolyticus-contaminated seafood.The FORC_023 strain was isolated from raw fish storage water, containing live fish at a sashimi restaurant. Here, we aimed to sequence and characterize the genome of the FORC_023 strain. The genome of the FORC_023 strain showed two circular chromosomes, which contained 4227 open reading frames (ORFs), 131 tRNA genes and 37 rRNA genes. Although the genome of FORC_023 did not include major virulence genes, such as genes encoding thermostable direct hemolysin (TDH) and TDH-related hemolysin (TRH), it contained genes encoding other hemolysins, secretion systems, iron uptake-related proteins and severalV. parahaemolyticusislands. The highest average nucleotide identity value was obtained between the FORC_023 strain and UCM-V493 (CP007004-6). Comparative genomic analysis of FORC_023 with UCM-V493 revealed that FORC_023 carried an additional genomic region encoding virulence factors, such as repeats-in-toxin and type II secretion factors. Furthermore,in vitrocytotoxicity testing showed that FORC_023 exhibited a high level of cytotoxicity toward INT-407 human epithelial cells. These results suggested that the FORC_023 strain may be a food-borne pathogen.

Original languageEnglish
Pages (from-to)ftw032
JournalPathogens and disease
Volume74
Issue number4
DOIs
StatePublished - 1 Jun 2016

Bibliographical note

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© FEMS 2016. All rights reserved. For permissions, please e-mail: [email protected].

Keywords

  • comparative analysis
  • food-borne pathogen
  • V. parahaemolyticus island
  • Vibrio parahaemolyticus; genome sequence
  • virulence factor

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