Accelerated electron paramagnetic resonance imaging using partial Fourier compressed sensing reconstruction

Chia Chu Chou, Gadisetti V.R. Chandramouli, Taehoon Shin, Nallathamby Devasahayam, Alan McMillan, Behtash Babadi, Rao Gullapalli, Murali Cherukuri, Jiachen Zhuo

Research output: Contribution to journalArticlepeer-review

Abstract

Purpose Electron paramagnetic resonance (EPR) imaging has evolved as a promising tool to provide non-invasive assessment of tissue oxygenation levels. Due to the extremely short T2 relaxation time of electrons, single point imaging (SPI) is used in EPRI, limiting achievable spatial and temporal resolution. This presents a problem when attempting to measure changes in hypoxic state. In order to capture oxygen variation in hypoxic tissues and localize cycling hypoxia regions, an accelerated EPRI imaging method with minimal loss of information is needed. Methods We present an image acceleration technique, partial Fourier compressed sensing (PFCS), that combines compressed sensing (CS) and partial Fourier reconstruction. PFCS augments the original CS equation using conjugate symmetry information for missing measurements. To further improve image quality in order to reconstruct low-resolution EPRI images, a projection onto convex sets (POCS)-based phase map and a spherical-sampling mask are used in the reconstruction process. The PFCS technique was used in phantoms and in vivo SCC7 tumor mice to evaluate image quality and accuracy in estimating O2 concentration. Results In both phantom and in vivo experiments, PFCS demonstrated the ability to reconstruct images more accurately with at least a 4-fold acceleration compared to traditional CS. Meanwhile, PFCS is able to better preserve the distinct spatial pattern in a phantom with a spatial resolution of 0.6 mm. On phantoms containing Oxo63 solution with different oxygen concentrations, PFCS reconstructed linewidth maps that were discriminative of different O2 concentrations. Moreover, PFCS reconstruction of partially sampled data provided a better discrimination of hypoxic and oxygenated regions in a leg tumor compared to traditional CS reconstructed images. Conclusions EPR images with an acceleration factor of four are feasible using PFCS with reasonable assessment of tissue oxygenation. The technique can greatly enhance EPR applications and improve our understanding cycling hypoxia. Moreover this technique can be easily extended to various MRI applications.

Original languageEnglish
Pages (from-to)90-99
Number of pages10
JournalMagnetic Resonance Imaging
Volume37
DOIs
StatePublished - 1 Apr 2017

Keywords

  • Compressed sensing
  • Cycling hypoxia
  • Electron paramagnetic resonance imaging
  • Single point imaging
  • Virtual coils

Fingerprint

Dive into the research topics of 'Accelerated electron paramagnetic resonance imaging using partial Fourier compressed sensing reconstruction'. Together they form a unique fingerprint.

Cite this