A genomic datawarehouse model for fast manipulation using repeat region

Arang Rhie; Kyungeun Lee; Hyun Seok Park

doi:10.1109/BIBMW.2010.5703950

A genomic datawarehouse model for fast manipulation using repeat region

Arang Rhie, Kyungeun Lee, Hyun Seok Park

Department of Computer Science & Engineering

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Abstract

By taking the fact that human genome consists of more than 35% of repetitive sequence, we present a data warehouse model that is efficient for nucleotide sequence based analysis. Roman's algorithm has been adapted in order to find repeat regions and these repeats are modeled into snowflake schemas for fast storing and querying results.

Original language	English
Title of host publication	2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010
Pages	868-869
Number of pages	2
DOIs	https://doi.org/10.1109/BIBMW.2010.5703950
State	Published - 2010
Event	2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010 - HongKong, China Duration: 18 Dec 2010 → 21 Dec 2010

Publication series

Name	2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010

Conference

Conference	2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010
Country/Territory	China
City	HongKong
Period	18/12/10 → 21/12/10

Keywords

Datawarehouse model
Repeat region
Repeatative sequence
Snowflake schema

Access to Document

10.1109/BIBMW.2010.5703950

Cite this

Rhie, A., Lee, K., & Park, H. S. (2010). A genomic datawarehouse model for fast manipulation using repeat region. In 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010 (pp. 868-869). Article 5703950 (2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010). https://doi.org/10.1109/BIBMW.2010.5703950

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title = "A genomic datawarehouse model for fast manipulation using repeat region",

abstract = "By taking the fact that human genome consists of more than 35% of repetitive sequence, we present a data warehouse model that is efficient for nucleotide sequence based analysis. Roman's algorithm has been adapted in order to find repeat regions and these repeats are modeled into snowflake schemas for fast storing and querying results.",

keywords = "Datawarehouse model, Repeat region, Repeatative sequence, Snowflake schema",

author = "Arang Rhie and Kyungeun Lee and Park, {Hyun Seok}",

year = "2010",

doi = "10.1109/BIBMW.2010.5703950",

language = "English",

isbn = "9781424483044",

series = "2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010",

pages = "868--869",

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note = "2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010 ; Conference date: 18-12-2010 Through 21-12-2010",

}

Rhie, A, Lee, K & Park, HS 2010, A genomic datawarehouse model for fast manipulation using repeat region. in 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010., 5703950, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010, pp. 868-869, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010, HongKong, China, 18/12/10. https://doi.org/10.1109/BIBMW.2010.5703950

A genomic datawarehouse model for fast manipulation using repeat region. / Rhie, Arang; Lee, Kyungeun; Park, Hyun Seok.
2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010. 2010. p. 868-869 5703950 (2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

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A genomic datawarehouse model for fast manipulation using repeat region

Abstract

Publication series

Conference

Keywords

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